Methods
A Selective Review of Negative Control Methods in Epidemiology
Shi X, Miao W, and Tchetgen Tchetgen EJ (2021). Current Epidemiology Reports, in press.
Spherical regression under mismatch corruption with application to automated knowledge translation
Shi X, Li X, and Cai T (2020). Journal of the American Statistical Association: Theory and Methods, in press
Multiply robust causal inference with double negative control adjustment for categorical unmeasured confounding
Shi X, Miao W, Nelson J, and Tchetgen Tchetgen EJ (2020). Journal of the Royal Statistical Society: Series B (Statistical Methodology), 82(2):521-540
Safety surveillance and the estimation of risk in select populations: flexible methods to control for confounding while targeting marginal comparisons via standardization [Student Travel Award, ICHPS 2018]
Shi X, Wellman R, Heagerty PJ, Nelson JC, and Cook AJ (2020). Statistics in Medicine, 39(4):369-386
Comparing healthcare utilization patterns via global differences in the endorsement of current procedural terminology codes [Distinguished Oral Presentation Award, WNAR 2015]
Shi X, Pashova H, and Heagerty PJ (2017). Annals of Applied Statistics, 11(3):1349-1374
Veridical Causal Inference using Propensity Score Methods for Comparative Effectiveness Research with Medical Claims.
Ross R, Shi X, Caram M, Tsao P, Lin P, Bohnert A, Zhang M, Mukherjee B (2020). Health Services and Outcomes Research Methodology, in press.
A Comparison of Parametric Propensity Score-Based Methods for Causal Inference with Multiple Treatments and a Binary Outcome.
Yu Y, Zhang M, Shi X, Caram M, Little R, Mukherjee B (2020). Statistics in Medicine, 40(7):1653-1677.
Phenotype risk scores (PheRS) for pancreatic cancer using time-stamped electronic health record data: Discovery and validation in two large biobanks.
Salvatore M, Beesley L, Fritsche L, Hanauer D, Shi X, Mondul A, Pearce C, Mukherjee B (2020). Journal of Biomedical Informatics, in press.
Clinical concept embeddings learned from massive sources of multimodal medical data
Beam AL, Kompa B, Fried I, Palmer N, Shi X, Cai T, and Kohane I (2020). Pacific Symposium on Biocomputing (PSB), 25: 295-306
Estimation of natural indirect effects robust to unmeasured confounding and mediator measurement error
Fulcher IR, Shi X, and Tchetgen Tchetgen, EJ (2019). Epidemiology, 30(6):825-834
A general approach to detect gene (G)-environment (E) additive interaction leveraging G-E independence in case-control studies
Tchetgen Tchetgen EJ, Shi X, Sofer T, and Wong, HW (2019). Statistics in Medicine. 38(24):4841-4853
Safety signaling methods for survival outcomes to control for confounding in the Mini-sentinel distributed database
Cook AJ, Wellman RD, Shi X, Izem R, Zhang R, Nguyen M, Tiwari RC, Heckbert SR, Gruber S, and Nelson JC (2018). FDA’s Sentinel Initiative: Project Report
Preprints:
A Confounding Bridge Approach for Double Negative Control Inference on Causal Effects
Miao W, Shi X, and Tchetgen Tchetgen EJ. (2020).
An Introduction to Proximal Causal Learning
Tchetgen Tchetgen EJ, Ying A, Cui Y, Shi X, and Miao W. (2020).
Semiparametric proximal causal inference
Cui Y, Pu H, Shi X, Miao W, Tchetgen Tchetgen EJ. (2020)
Patient Recruitment Using Electronic Health Records Under Selection Bias: a Two-phase Sampling Framework
Zhang G, Beesley LJ, Mukherjee B, Shi X. (2020)
Analysis of Readmissions Data Taking Account of Competing Risks
Wu W, He K, Shi X, Schaubel D, Kalbfleisch J. (2020) [ASA Lifetime Data Science Section 2021 Student Paper Award]
Shi X, Miao W, and Tchetgen Tchetgen EJ (2021). Current Epidemiology Reports, in press.
Spherical regression under mismatch corruption with application to automated knowledge translation
Shi X, Li X, and Cai T (2020). Journal of the American Statistical Association: Theory and Methods, in press
Multiply robust causal inference with double negative control adjustment for categorical unmeasured confounding
Shi X, Miao W, Nelson J, and Tchetgen Tchetgen EJ (2020). Journal of the Royal Statistical Society: Series B (Statistical Methodology), 82(2):521-540
Safety surveillance and the estimation of risk in select populations: flexible methods to control for confounding while targeting marginal comparisons via standardization [Student Travel Award, ICHPS 2018]
Shi X, Wellman R, Heagerty PJ, Nelson JC, and Cook AJ (2020). Statistics in Medicine, 39(4):369-386
Comparing healthcare utilization patterns via global differences in the endorsement of current procedural terminology codes [Distinguished Oral Presentation Award, WNAR 2015]
Shi X, Pashova H, and Heagerty PJ (2017). Annals of Applied Statistics, 11(3):1349-1374
Veridical Causal Inference using Propensity Score Methods for Comparative Effectiveness Research with Medical Claims.
Ross R, Shi X, Caram M, Tsao P, Lin P, Bohnert A, Zhang M, Mukherjee B (2020). Health Services and Outcomes Research Methodology, in press.
A Comparison of Parametric Propensity Score-Based Methods for Causal Inference with Multiple Treatments and a Binary Outcome.
Yu Y, Zhang M, Shi X, Caram M, Little R, Mukherjee B (2020). Statistics in Medicine, 40(7):1653-1677.
Phenotype risk scores (PheRS) for pancreatic cancer using time-stamped electronic health record data: Discovery and validation in two large biobanks.
Salvatore M, Beesley L, Fritsche L, Hanauer D, Shi X, Mondul A, Pearce C, Mukherjee B (2020). Journal of Biomedical Informatics, in press.
Clinical concept embeddings learned from massive sources of multimodal medical data
Beam AL, Kompa B, Fried I, Palmer N, Shi X, Cai T, and Kohane I (2020). Pacific Symposium on Biocomputing (PSB), 25: 295-306
Estimation of natural indirect effects robust to unmeasured confounding and mediator measurement error
Fulcher IR, Shi X, and Tchetgen Tchetgen, EJ (2019). Epidemiology, 30(6):825-834
A general approach to detect gene (G)-environment (E) additive interaction leveraging G-E independence in case-control studies
Tchetgen Tchetgen EJ, Shi X, Sofer T, and Wong, HW (2019). Statistics in Medicine. 38(24):4841-4853
Safety signaling methods for survival outcomes to control for confounding in the Mini-sentinel distributed database
Cook AJ, Wellman RD, Shi X, Izem R, Zhang R, Nguyen M, Tiwari RC, Heckbert SR, Gruber S, and Nelson JC (2018). FDA’s Sentinel Initiative: Project Report
Preprints:
A Confounding Bridge Approach for Double Negative Control Inference on Causal Effects
Miao W, Shi X, and Tchetgen Tchetgen EJ. (2020).
An Introduction to Proximal Causal Learning
Tchetgen Tchetgen EJ, Ying A, Cui Y, Shi X, and Miao W. (2020).
Semiparametric proximal causal inference
Cui Y, Pu H, Shi X, Miao W, Tchetgen Tchetgen EJ. (2020)
Patient Recruitment Using Electronic Health Records Under Selection Bias: a Two-phase Sampling Framework
Zhang G, Beesley LJ, Mukherjee B, Shi X. (2020)
Analysis of Readmissions Data Taking Account of Competing Risks
Wu W, He K, Shi X, Schaubel D, Kalbfleisch J. (2020) [ASA Lifetime Data Science Section 2021 Student Paper Award]
Applications
Study Protocol: CareAvenue program to improve unmet social risk factors and diabetes outcomes- A randomized controlled trial
Patel MR, Heisler M, Piette JD, Resnicow K, Song PXK, Choe HM, Shi X, Tobi J, Smith A (2020). Contemporary Clinical Trials, 89:105933
Exposure and risk factors for COVID-19 and the impact of staying home on Michigan residents
Wu KH, Hornsby WE, Klunder B, Krause A, Driscoll A, Kulka J, Bickett-Hickok R, Fellows A, Graham S, Kaleba EO, Hayek SS, Shi X, Sutton NR, Douuville N, Mukherjee B, Jammerson K, Brummett CCM, Willer CJ (2021). PLOS ONE, 16(2), p.e0246447.
Wake-Up Stroke is not associated with Obstructive Sleep Apnea
Schütz SG, Lisabeth LD, Gibbs R, Shi X, Case E, Chervin RD, Brown DL. (2021). Sleep Medicine, 81:158-62.
Tissue-based stroke definition impacts stroke incidence but not ethnic differences
Morgenstern LB, Zahuranec DB, Lim J, Shi X, Brown DL, Kerber KA, Meurer WJ, Skolarus LE, Adelman EE, Campbell MS, Case E, Lisabeth LD. (2021) . Journal of Stroke and Cerebrovascular Diseases, in press.
The comparative effectiveness of minimally invasive surgery and conventional approaches to major or challenging hepatectomies [covered by the Seattle Times]
Thornblade LW, Shi X, Ruiz A, Flum DR, and Park JO (2017). Journal of the American College of Surgeons, 224(5):851-861
Preoperative immunonutrition and elective colorectal resection outcomes
Thornblade LW, Varghese TK, Shi X, Johnson EK, Bastawrous A, Billingham RP, Thirlby R, Fichera A, and Flum DR (2017). Diseases of Colon and Rectum, 60(1):68-75
Long term effects of repeated injections of local anesthetic with or without corticosteroid for lumbar spinal stenosis: a randomized trial
Friedly JL, Comstock BA, Turner JA, Heagerty PJ, Deyo RA, Bauer Z, Avins AL, Nedeljkovic SS, Nerenz DR,
Shi X, Annaswamy T, Standaert CJ, Smuck M, Kennedy DJ, Akuthota V, Sibell D, Wasan AD, Diehn F, Suri P, Rundell SD, Kessler L, Chen AS, and Jarvik JG. (2017). Archives of Physical Medicine and Rehabilitation, 98(8):1499-1507
Association of early imaging for back pain with clinical outcomes in older adults
Jarvik, JG, Gold, LS, Comstock, BA, Heagerty, PJ, Rundell, SD, Turner, JA, Avins, AL, Bauer, Z, Bresnahan, BW, Friedly, JL, James, K, Kessler, L, Nedeljkovic, SS, Nerenz, DR, Shi X, Sullivan, SD, Chan, L, Schwalb, JM, and Deyo, RA (2015). Journal of the American Medical Association, 313(11):1143-1153
Back pain in seniors: the back pain outcomes using longitudinal data (BOLD) cohort baseline data
Jarvik, JG, Comstock, BA, Heagerty, PJ, Turner, JA, Sullivan, SD, Shi X, Nerenz, DR, Nedeljkovic, SS, Kessler, L, James, K, Friedly, JL, Bresnahan, BW, Bauer, Z, Avins, AL, and Deyo, RA. (2014). BMC Musculoskeletal Disorders, 15(134):1-11
Patel MR, Heisler M, Piette JD, Resnicow K, Song PXK, Choe HM, Shi X, Tobi J, Smith A (2020). Contemporary Clinical Trials, 89:105933
Exposure and risk factors for COVID-19 and the impact of staying home on Michigan residents
Wu KH, Hornsby WE, Klunder B, Krause A, Driscoll A, Kulka J, Bickett-Hickok R, Fellows A, Graham S, Kaleba EO, Hayek SS, Shi X, Sutton NR, Douuville N, Mukherjee B, Jammerson K, Brummett CCM, Willer CJ (2021). PLOS ONE, 16(2), p.e0246447.
Wake-Up Stroke is not associated with Obstructive Sleep Apnea
Schütz SG, Lisabeth LD, Gibbs R, Shi X, Case E, Chervin RD, Brown DL. (2021). Sleep Medicine, 81:158-62.
Tissue-based stroke definition impacts stroke incidence but not ethnic differences
Morgenstern LB, Zahuranec DB, Lim J, Shi X, Brown DL, Kerber KA, Meurer WJ, Skolarus LE, Adelman EE, Campbell MS, Case E, Lisabeth LD. (2021) . Journal of Stroke and Cerebrovascular Diseases, in press.
The comparative effectiveness of minimally invasive surgery and conventional approaches to major or challenging hepatectomies [covered by the Seattle Times]
Thornblade LW, Shi X, Ruiz A, Flum DR, and Park JO (2017). Journal of the American College of Surgeons, 224(5):851-861
Preoperative immunonutrition and elective colorectal resection outcomes
Thornblade LW, Varghese TK, Shi X, Johnson EK, Bastawrous A, Billingham RP, Thirlby R, Fichera A, and Flum DR (2017). Diseases of Colon and Rectum, 60(1):68-75
Long term effects of repeated injections of local anesthetic with or without corticosteroid for lumbar spinal stenosis: a randomized trial
Friedly JL, Comstock BA, Turner JA, Heagerty PJ, Deyo RA, Bauer Z, Avins AL, Nedeljkovic SS, Nerenz DR,
Shi X, Annaswamy T, Standaert CJ, Smuck M, Kennedy DJ, Akuthota V, Sibell D, Wasan AD, Diehn F, Suri P, Rundell SD, Kessler L, Chen AS, and Jarvik JG. (2017). Archives of Physical Medicine and Rehabilitation, 98(8):1499-1507
Association of early imaging for back pain with clinical outcomes in older adults
Jarvik, JG, Gold, LS, Comstock, BA, Heagerty, PJ, Rundell, SD, Turner, JA, Avins, AL, Bauer, Z, Bresnahan, BW, Friedly, JL, James, K, Kessler, L, Nedeljkovic, SS, Nerenz, DR, Shi X, Sullivan, SD, Chan, L, Schwalb, JM, and Deyo, RA (2015). Journal of the American Medical Association, 313(11):1143-1153
Back pain in seniors: the back pain outcomes using longitudinal data (BOLD) cohort baseline data
Jarvik, JG, Comstock, BA, Heagerty, PJ, Turner, JA, Sullivan, SD, Shi X, Nerenz, DR, Nedeljkovic, SS, Kessler, L, James, K, Friedly, JL, Bresnahan, BW, Bauer, Z, Avins, AL, and Deyo, RA. (2014). BMC Musculoskeletal Disorders, 15(134):1-11