Methods
Clinical concept embeddings learned from massive sources of multimodal medical data
Beam AL, Kompa B, Fried I, Palmer N, Shi X, Cai T, and Kohane I (2020). Pacific Symposium on Biocomputing (PSB), in press
Estimation of natural indirect effects robust to unmeasured confounding and mediator measurement error
Fulcher IR, Shi X, and Tchetgen Tchetgen, EJ (2019). Epidemiology, 30(6):825-834
A general approach to detect gene (G)-environment (E) additive interaction leveraging G-E independence in case-control studies
Tchetgen Tchetgen EJ, Shi X, Sofer T, and Wong, HW (2019). Statistics in Medicine. 38(24):4841-4853
Safety signaling methods for survival outcomes to control for confounding in the Mini-sentinel distributed database
Cook AJ, Wellman RD, Shi X, Izem R, Zhang R, Nguyen M, Tiwari RC, Heckbert SR, Gruber S, and Nelson JC (2018). FDA’s Sentinel Initiative: Project Report
Comparing healthcare utilization patterns via global differences in the endorsement of current procedural terminology codes [Distinguished Oral Presentation Award, WNAR 2015]
Shi X, Pashova H, and Heagerty PJ (2017). Annals of Applied Statistics, 11(3):1349-1374
Safety surveillance and the estimation of risk in select populations: flexible methods to control for confounding while targeting marginal comparisons via standardization [Student Travel Award, ICHPS 2018]
Shi X, Wellman R, Heagerty PJ, Nelson JC, and Cook AJ (2019). Statistics in Medicine, in press
Multiply robust causal inference with double negative control adjustment for categorical unmeasured confounding
Shi X, Miao W, Nelson J, and Tchetgen Tchetgen EJ (2019). Journal of the Royal Statistical Society: Series B (Statistical Methodology), accepted
Spherical regression under mismatch corruption with application to automated knowledge translation
Shi X, Li X, and Cai T (2019). Under revision
Beam AL, Kompa B, Fried I, Palmer N, Shi X, Cai T, and Kohane I (2020). Pacific Symposium on Biocomputing (PSB), in press
Estimation of natural indirect effects robust to unmeasured confounding and mediator measurement error
Fulcher IR, Shi X, and Tchetgen Tchetgen, EJ (2019). Epidemiology, 30(6):825-834
A general approach to detect gene (G)-environment (E) additive interaction leveraging G-E independence in case-control studies
Tchetgen Tchetgen EJ, Shi X, Sofer T, and Wong, HW (2019). Statistics in Medicine. 38(24):4841-4853
Safety signaling methods for survival outcomes to control for confounding in the Mini-sentinel distributed database
Cook AJ, Wellman RD, Shi X, Izem R, Zhang R, Nguyen M, Tiwari RC, Heckbert SR, Gruber S, and Nelson JC (2018). FDA’s Sentinel Initiative: Project Report
Comparing healthcare utilization patterns via global differences in the endorsement of current procedural terminology codes [Distinguished Oral Presentation Award, WNAR 2015]
Shi X, Pashova H, and Heagerty PJ (2017). Annals of Applied Statistics, 11(3):1349-1374
Safety surveillance and the estimation of risk in select populations: flexible methods to control for confounding while targeting marginal comparisons via standardization [Student Travel Award, ICHPS 2018]
Shi X, Wellman R, Heagerty PJ, Nelson JC, and Cook AJ (2019). Statistics in Medicine, in press
Multiply robust causal inference with double negative control adjustment for categorical unmeasured confounding
Shi X, Miao W, Nelson J, and Tchetgen Tchetgen EJ (2019). Journal of the Royal Statistical Society: Series B (Statistical Methodology), accepted
Spherical regression under mismatch corruption with application to automated knowledge translation
Shi X, Li X, and Cai T (2019). Under revision
Applications
The comparative effectiveness of minimally invasive surgery and conventional approaches to major or challenging hepatectomies [covered by the Seattle Times]
Thornblade LW, Shi X, Ruiz A, Flum DR, and Park JO (2017). Journal of the American College of Surgeons, 224(5):851-861
Preoperative immunonutrition and elective colorectal resection outcomes
Thornblade LW, Varghese TK, Shi X, Johnson EK, Bastawrous A, Billingham RP, Thirlby R, Fichera A, and Flum DR (2017). Diseases of Colon and Rectum, 60(1):68-75
Long term effects of repeated injections of local anesthetic with or without corticosteroid for lumbar spinal stenosis: a randomized trial
Friedly JL, Comstock BA, Turner JA, Heagerty PJ, Deyo RA, Bauer Z, Avins AL, Nedeljkovic SS, Nerenz DR,
Shi, X, Annaswamy T, Standaert CJ, Smuck M, Kennedy DJ, Akuthota V, Sibell D, Wasan AD, Diehn F, Suri P, Rundell SD, Kessler L, Chen AS, and Jarvik JG. (2017). Archives of Physical Medicine and Rehabilitation, 98(8):1499-1507
Association of early imaging for back pain with clinical outcomes in older adults
Jarvik, JG, Gold, LS, Comstock, BA, Heagerty, PJ, Rundell, SD, Turner, JA, Avins, AL, Bauer, Z, Bresnahan, BW, Friedly, JL, James, K, Kessler, L, Nedeljkovic, SS, Nerenz, DR, Shi, X, Sullivan, SD, Chan, L, Schwalb, JM, and Deyo, RA (2015). Journal of the American Medical Association, 313(11):1143-1153
Back pain in seniors: the back pain outcomes using longitudinal data (BOLD) cohort baseline data
Jarvik, JG, Comstock, BA, Heagerty, PJ, Turner, JA, Sullivan, SD, Shi, X, Nerenz, DR, Nedeljkovic, SS, Kessler, L, James, K, Friedly, JL, Bresnahan, BW, Bauer, Z, Avins, AL, and Deyo, RA. (2014). BMC Musculoskeletal Disorders, 15(134):1-11
Thornblade LW, Shi X, Ruiz A, Flum DR, and Park JO (2017). Journal of the American College of Surgeons, 224(5):851-861
Preoperative immunonutrition and elective colorectal resection outcomes
Thornblade LW, Varghese TK, Shi X, Johnson EK, Bastawrous A, Billingham RP, Thirlby R, Fichera A, and Flum DR (2017). Diseases of Colon and Rectum, 60(1):68-75
Long term effects of repeated injections of local anesthetic with or without corticosteroid for lumbar spinal stenosis: a randomized trial
Friedly JL, Comstock BA, Turner JA, Heagerty PJ, Deyo RA, Bauer Z, Avins AL, Nedeljkovic SS, Nerenz DR,
Shi, X, Annaswamy T, Standaert CJ, Smuck M, Kennedy DJ, Akuthota V, Sibell D, Wasan AD, Diehn F, Suri P, Rundell SD, Kessler L, Chen AS, and Jarvik JG. (2017). Archives of Physical Medicine and Rehabilitation, 98(8):1499-1507
Association of early imaging for back pain with clinical outcomes in older adults
Jarvik, JG, Gold, LS, Comstock, BA, Heagerty, PJ, Rundell, SD, Turner, JA, Avins, AL, Bauer, Z, Bresnahan, BW, Friedly, JL, James, K, Kessler, L, Nedeljkovic, SS, Nerenz, DR, Shi, X, Sullivan, SD, Chan, L, Schwalb, JM, and Deyo, RA (2015). Journal of the American Medical Association, 313(11):1143-1153
Back pain in seniors: the back pain outcomes using longitudinal data (BOLD) cohort baseline data
Jarvik, JG, Comstock, BA, Heagerty, PJ, Turner, JA, Sullivan, SD, Shi, X, Nerenz, DR, Nedeljkovic, SS, Kessler, L, James, K, Friedly, JL, Bresnahan, BW, Bauer, Z, Avins, AL, and Deyo, RA. (2014). BMC Musculoskeletal Disorders, 15(134):1-11